M.S. in Statistics
Rice University, Houston, TX
Graduate Research Assistant in computational cancer bioinformatics, working on transcriptomic deconvolution and multi-omic methods. MSTAT candidate at Rice University, with research spanning gene co-expression networks, 3D morphometrics, and Bayesian statistics.
Wang Lab, MD Anderson Cancer Center · Rice University, Department of Statistics · Houston, TX
Rice University, Houston, TX
University of Houston · Magna Cum Laude, GPA 3.77
Lone Star College–CyFair · Magna Cum Laude, GPA 3.80
Graduate Research Assistant, Wang Lab — MD Anderson Cancer Center (with Dr. Wenyi Wang)
Developing and benchmarking cell-type deconvolution methods for bulk RNA-seq in cancer genomics, and contributing to a multi-institution cancer genomics compendium project (data coordination with DFCI, NCI, and MIT).
Rice University Collaborative Research (with Manuel and Dr. Judy Wang)
Applying point-cloud deep learning architectures (PointMLP, PointNeXt, Point Transformer) to classify fossil teeth and skeletal scans, benchmarked against PointNet++ and DGCNN.
Rice University / MD Anderson Collaborative Research
Contributing to multi-omic profiling of extracellular vesicles for early-stage predictive diagnostic biomarkers; supervising a research assistant on experimental and analytical workflows.
University of Houston Volunteer Research (with Sara Loetzerich & Dr. Jake Daane)
Investigating the genetic basis of skeletal heterochrony across Cypriniform fishes using Danio rerio and Danionella cerebrum, combining comparative genomics with in situ hybridization and PCR-based genotyping.
Rice University Graduate Research
Optimized the MEGENA (Multiscale Embedded Gene Co-expression Network Analysis) pipeline for GPU/CPU architectures to identify novel AMD biomarkers and genetic regulators from RNA-seq gene co-expression modules.
→ RNAseq-AMD repositoryUniversity of Houston Baccalaureate & Post-Baccalaureate Research (with Dr. Jake Daane)
Characterized skeletal density variation across the phylogeny of Baikal sculpins using µCT scans processed in Thermo Fisher's Amira software. Published in Integrative Organismal Biology.
→ Project repositoryUniversity of Houston Summer Undergraduate Research Fellowship (with Dr. Andrea Mang)
Implemented and compared MCMC algorithms (Metropolis-Hastings, Hamiltonian, Stochastic-Newton) in Python on Bayesian inference problems.
Selected code repositories. See github.com/Brayan695 for the full list.
Gene co-expression network analysis pipeline (MEGENA) for identifying biomarkers of age-related macular degeneration from bulk RNA-seq data.
View repository →µCT-based morphometric analysis of skeletal density across benthic-to-pelagic transitions in Baikal sculpins. Companion code for the published Integrative Organismal Biology paper.
View repository →Machine learning classification of water safety/potability from water-quality measurements.
View repository →R implementation of the water safety classification project.
View repository →American Statistical Association (ASA), Rice Chapter
SACNAS, University of Houston Chapter
Cougars of Data Science, University of Houston